Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 16 curated entries in PaperBLAST's database that match '3.1.2.4' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20752: 3-hydroxyisobutyryl-CoA hydrolase
is similar to:
PaperBLAST

bch / Q81DR3: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Bacillus cereus
Q81DR3: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Bacillus cereus

40% id,
95% cov

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

39% id,
98% cov

HIBCH_RAT / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 from Rattus norvegicus
Hibch / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Rattus norvegicus

41% id,
92% cov

More...

SMc02227: fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase
is similar to:
PaperBLAST

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

24% id,
95% cov

SMc01153: enoyl-CoA hydratase
is similar to:
PaperBLAST

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

32% id,
69% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

36% id,
61% cov

PfGW456L13_2986: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

32% id,
63% cov

More...

SMa1408: dehydratase
is similar to:
PaperBLAST

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

29% id,
70% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

28% id,
66% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

28% id,
62% cov

More...

SMc01669: enoyl-CoA hydratase
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

38% id,
51% cov

PS417_13835: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas simiae

34% id,
56% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

30% id,
63% cov

More...

SM_b21126: enoyl-CoA hydratase
is similar to:
PaperBLAST

HIBC1_ARATH / Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase 1; CoA-thioester hydrolase CHY1; EC 3.1.2.-; EC 3.1.2.4 from Arabidopsis thaliana
Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Arabidopsis thaliana

28% id,
69% cov

SMc01641: carnitinyl-CoA dehydratase
is similar to:
PaperBLAST

PS417_13835: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas simiae

27% id,
55% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

24% id,
59% cov

AO353_25665: 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

25% id,
55% cov

SM_b21633: enoyl-CoA hydratase
is similar to:
PaperBLAST

HIBCH_YEAST / P28817: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; Mitochondrial small ribosomal subunit protein mS47; EC 3.1.2.4 from Saccharomyces cerevisiae

26% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3602704-3603522 (frame -1) on NC_003047
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis
Also see hits to annotated proteins above

31% id,
65% cov

2471411-2472988 (frame +2) on NC_003047
is similar to:
PaperBLAST

PS417_13835: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas simiae
Also see hits to annotated proteins above

34% id,
59% cov

AO353_25665: 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens
Also see hits to annotated proteins above

31% id,
59% cov

HIBCH_HUMAN / Q6NVY1: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 from Homo sapiens
Also see hits to annotated proteins above

33% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory