Curated BLAST for Genomes


Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 529 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc03160: beta-glucosidase
is similar to:

CAC47470.1: β-glucosidase (SMc03160) (EC

100% id,
100% cov

AAA22085.1: β-glucosidase (Abg) (EC

75% id,
99% cov

ACO44852.1: Deide_00550 (EC

50% id,
98% cov


SM_b21655: beta-galactosidase
is similar to:

CDO50494.1: β-glucosidase (Gh2;TbGH2) (EC

28% id,
41% cov

E5RWQ2: beta-glucosidase (EC from Niallia circulans

27% id,
25% cov

SMc04255: beta-mannosidase
is similar to:

CDO50494.1: β-glucosidase (Gh2;TbGH2) (EC

29% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1647261-1648328 (frame +3) on NC_003047
is similar to:

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC; EC from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC||2.4.1.-)

26% id,
52% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory