Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 5 curated entries in PaperBLAST's database that match '3.7.1.21' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b21633: enoyl-CoA hydratase
is similar to:
PaperBLAST

BAMA_SYNAS / Q2LXU2: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; 6-OCH-CoA hydrolase; 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; EC 3.7.1.21 from Syntrophus aciditrophicus
bamA / Q2LXU2: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase monomer (EC 3.7.1.21) from Syntrophus aciditrophicus

31% id,
45% cov

BAMA_THAAR / O87872: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Beta-oxoacyl-CoA hydrolase; Oah; EC 3.7.1.21 from Thauera aromatica
O87872: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase (EC 3.7.1.21) from Thauera aromatica

30% id,
45% cov

SMc01153: enoyl-CoA hydratase
is similar to:
PaperBLAST

BAMA_GEOMG / Q39TV7: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; 6-OCH-CoA hydrolase; 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; EC 3.7.1.21 from Geobacter metallireducens

30% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1661559-1662446 (frame +3) on NC_003078
is similar to:
PaperBLAST

BAMA_SYNAS / Q2LXU2: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; 6-OCH-CoA hydrolase; 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; EC 3.7.1.21 from Syntrophus aciditrophicus
bamA / Q2LXU2: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase monomer (EC 3.7.1.21) from Syntrophus aciditrophicus
Also see hits to annotated proteins above

29% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory