Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa0680: amino acid (ornithine, lysine, arginine) decarboxylase
is similar to:
PaperBLAST

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

51% id,
98% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

50% id,
94% cov

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Levilactobacillus brevis

48% id,
96% cov

More...

SMa0682: decarboxylase (lysine, ornithine, arginine)
is similar to:
PaperBLAST

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

33% id,
100% cov

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

32% id,
97% cov

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

34% id,
90% cov

More...

SMc02983: ornithine, DAP, or arginine decarboxylase
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

33% id,
91% cov

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

32% id,
90% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

30% id,
95% cov

More...

SMc00723: diaminopimelate DAP decarboxylase
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

25% id,
89% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

23% id,
83% cov

A8J7E8: ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii

26% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory