Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa0682: decarboxylase (lysine, ornithine, arginine)
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

57% id,
100% cov

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

42% id,
95% cov

Q9Z4R7: lysine decarboxylase (EC 4.1.1.18) from Eikenella corrodens

41% id,
97% cov

More...

SMa2402: RhsB L-2,4-diaminobutyrate decarboxylase
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

43% id,
95% cov

bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida

35% id,
92% cov

SMc02544: hypothetical protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

41% id,
82% cov

SMa0680: amino acid (ornithine, lysine, arginine) decarboxylase
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

37% id,
89% cov

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

33% id,
88% cov

LDCC_ECOLI / P52095: Constitutive lysine decarboxylase; LDCC; EC 4.1.1.18 from Escherichia coli
LdcC / b0186: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
ldcC / GB|BAA21656.1: lysine decarboxylase, constitutive; EC 4.1.1.18 from Escherichia coli
ldcC / P52095: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
P52095: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

33% id,
88% cov

More...

SMc02983: ornithine, DAP, or arginine decarboxylase
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

36% id,
89% cov

SMc00723: diaminopimelate DAP decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

31% id,
99% cov

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

27% id,
95% cov

SMc01731: hypothetical protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

27% id,
87% cov

SM_b21631: carboxynorspermidine decarboxylase
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

21% id,
91% cov

SM_b21414: amino acid decarboxylase
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

25% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory