Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 55 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa0682: decarboxylase (lysine, ornithine, arginine)
is similar to:
PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

39% id,
99% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

38% id,
98% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

28% id,
33% cov

SMa0680: amino acid (ornithine, lysine, arginine) decarboxylase
is similar to:
PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

33% id,
89% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

33% id,
90% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

35% id,
10% cov

SMc02983: ornithine, DAP, or arginine decarboxylase
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

30% id,
76% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

22% id,
66% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

25% id,
46% cov

More...

SMc00723: diaminopimelate DAP decarboxylase
is similar to:
PaperBLAST

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

25% id,
59% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

28% id,
45% cov

A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Bacteroides dorei

23% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory