Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc04029: low specificity L-threonine aldolase
is similar to:
PaperBLAST

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

91% id,
100% cov

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

41% id,
89% cov

ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei

26% id,
89% cov

More...

SMc01770: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

60% id,
99% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

58% id,
96% cov

SMa2135: GlyA2 serine hydroxymethyltransferase, SHMT
is similar to:
PaperBLAST

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

56% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

59% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory