Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 5 curated entries in PaperBLAST's database that match '4.2.1.12' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc03068: phosphogluconate dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

59% id,
100% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

58% id,
98% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

54% id,
98% cov

SMc04144: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

31% id,
90% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
83% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

29% id,
88% cov

SMc04045: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
83% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

29% id,
91% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

30% id,
51% cov

More...

SM_b20115: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

32% id,
83% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

29% id,
90% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

31% id,
82% cov

SMc00884: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
82% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

31% id,
83% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

30% id,
88% cov

SM_b20890: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

29% id,
83% cov

SMa0235: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

27% id,
87% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

31% id,
72% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

27% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory