Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 64 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc03846: aconitate hydratase
is similar to:
PaperBLAST

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

72% id,
100% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

64% id,
100% cov

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

63% id,
100% cov

More...

SMc03823: isopropylmalate isomerase large subunit
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

25% id,
56% cov

D3GQL1: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

26% id,
52% cov

ACOHC_CAEEL / Q23500: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Gex-3-interacting protein 22; EC 4.2.1.3 from Caenorhabditis elegans
Q23500: aconitate hydratase (EC 4.2.1.3) from Caenorhabditis elegans

26% id,
51% cov

More...

SMc03795: isopropylmalate isomerase small subunit
is similar to:
PaperBLAST

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

25% id,
21% cov

Q9NFX2: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster

28% id,
17% cov

Q9P7D4: aconitate hydratase (EC 4.2.1.3) from Schizosaccharomyces pombe

28% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory