Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 12 curated entries in PaperBLAST's database that match '4.2.1.43' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20892: hypothetical protein
is similar to:
PaperBLAST

SM_b20892: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Sinorhizobium meliloti

100% id,
100% cov

AO356_24595: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens

57% id,
96% cov

Pf6N2E2_611: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens

57% id,
96% cov

More...

SMa0247: hypothetical protein
is similar to:
PaperBLAST

xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii

29% id,
94% cov

SM_b21112: bifunctional 2-hydroxyhepta-2,4-diene-1, 7-dioatesomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
is similar to:
PaperBLAST

xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii

31% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

381935-382915 (frame +2) on NC_003037
is similar to:
PaperBLAST

Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp.

27% id,
80% cov

3374177-3375139 (frame +2) on NC_003047
is similar to:
PaperBLAST

Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp.

26% id,
81% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory