Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.44' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc00433: myo-inositol catabolism protein
is similar to:
PaperBLAST

SMc00433: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Sinorhizobium meliloti

100% id,
100% cov

BPHYT_RS13920: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Burkholderia phytofirmans

43% id,
96% cov

PS417_11855: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas simiae

42% id,
98% cov

More...

SMc03162: hypothetical protein
is similar to:
PaperBLAST

AO353_21340: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

27% id,
59% cov

BPHYT_RS13920: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Burkholderia phytofirmans

26% id,
57% cov

PGA1_c07270: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Phaeobacter inhibens

27% id,
50% cov

More...

SMa1354: Isomerase
is similar to:
PaperBLAST

PS417_11855: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas simiae

23% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory