Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02899: prephenate dehydratase
is similar to:
PaperBLAST

Q5NLV8: prephenate dehydratase (EC 4.2.1.51) from Zymomonas mobilis

47% id,
84% cov

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

32% id,
100% cov

Q6Z3Y3: prephenate dehydratase (EC 4.2.1.51) from Oryza sativa

39% id,
78% cov

More...

SMa2199: ABC transporter substrate-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

24% id,
85% cov

SMc01205: amino-acid-binding periplasmic signal peptide protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

23% id,
80% cov

SMa0495: ABC transporter substrate-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

25% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

255954-256829 (frame +3) on NC_003047
is similar to:
PaperBLAST

Q5NLV8: prephenate dehydratase (EC 4.2.1.51) from Zymomonas mobilis
Also see hits to annotated proteins above

46% id,
87% cov

AROD1_ARATH / Q9SA96: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic; AtADT1; AtPDT1; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
75% cov

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Also see hits to annotated proteins above

37% id,
75% cov

More...

3527792-3528724 (frame +2) on NC_003047
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

23% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory