Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.68' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b21113: hypothetical protein
is similar to:
PaperBLAST

HSERO_RS05235: L-fuconate dehydratase (EC 4.2.1.68) from Herbaspirillum seropedicae

75% id,
100% cov

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

58% id,
97% cov

G3Y683: L-fuconate dehydratase (EC 4.2.1.68) from Aspergillus niger

56% id,
95% cov

More...

SMc02776: altronate hydrolase
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

36% id,
93% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

37% id,
75% cov

SM_b21107: mandelate racemase or evolutionary related enzyme of the mandelate racemase muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

G3Y683: L-fuconate dehydratase (EC 4.2.1.68) from Aspergillus niger

26% id,
83% cov

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

34% id,
60% cov

HSERO_RS05235: L-fuconate dehydratase (EC 4.2.1.68) from Herbaspirillum seropedicae

30% id,
63% cov

More...

SMa1351: enolase
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

31% id,
51% cov

SMa1461: muconate cycloisomerase
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

27% id,
39% cov

HSERO_RS05235: L-fuconate dehydratase (EC 4.2.1.68) from Herbaspirillum seropedicae

28% id,
35% cov

G3Y683: L-fuconate dehydratase (EC 4.2.1.68) from Aspergillus niger

23% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory