Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20446: mannonate dehydratase
is similar to:
PaperBLAST

UXUA_ECOLI / P24215: Mannonate dehydratase; D-mannonate hydro-lyase; EC 4.2.1.8 from Escherichia coli
UxuA / b4322: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
uxuA / P24215: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
P24215: mannonate dehydratase (EC 4.2.1.8) from Escherichia coli

53% id,
100% cov

Q1QT83: mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens

53% id,
99% cov

uxuA / Q9WXS4: D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima

37% id,
98% cov

More...

SM_b20510: galactonate dehydratase
is similar to:
PaperBLAST

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

32% id,
99% cov

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

32% id,
56% cov

MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum

32% id,
56% cov

More...

SMa0064: dehydratase/enolase
is similar to:
PaperBLAST

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

28% id,
98% cov

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

28% id,
99% cov

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

29% id,
94% cov

More...

SM_b21107: mandelate racemase or evolutionary related enzyme of the mandelate racemase muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

29% id,
88% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

28% id,
88% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

26% id,
91% cov

More...

SMa1351: enolase
is similar to:
PaperBLAST

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

28% id,
89% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

28% id,
89% cov

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

25% id,
91% cov

More...

SMa0708: enolase
is similar to:
PaperBLAST

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

26% id,
93% cov

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

27% id,
81% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

33% id,
36% cov

More...

SMa1461: muconate cycloisomerase
is similar to:
PaperBLAST

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

23% id,
86% cov

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

26% id,
53% cov

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

33% id,
33% cov

More...

SMa0056: dehydratase/enolase
is similar to:
PaperBLAST

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

25% id,
70% cov

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

30% id,
30% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

31% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory