Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 22 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa1872: threonine dehydratase
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

40% id,
94% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

38% id,
98% cov

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

37% id,
93% cov

More...

SM_b20432: threonine dehydratase
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

35% id,
93% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

35% id,
94% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

33% id,
96% cov

More...

SM_b21134: amino acid processing enzyme, low specificity D-threonine aldolase
is similar to:
PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; EC 4.3.1.18 from Gallus gallus

29% id,
98% cov

SMc00936: threonine dehydratase
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

29% id,
94% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

29% id,
91% cov

SMc00421: O-acetylserine sulfhydrylase A
is similar to:
PaperBLAST

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

27% id,
87% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

27% id,
87% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

25% id,
88% cov

More...

SMc01174: cysteine synthase A
is similar to:
PaperBLAST

Q9HYN9: D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa

25% id,
52% cov

AO353_25210: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

24% id,
53% cov

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

31% id,
41% cov

More...

SMc02766: tryptophan synthase subunit beta
is similar to:
PaperBLAST

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

25% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory