Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 41 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20259: dihydrodipicolinate synthase
is similar to:
PaperBLAST

A9CGZ4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

88% id,
100% cov

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

33% id,
83% cov

dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis

26% id,
74% cov

SM_b20140: dihydrodipicolinate synthase
is similar to:
PaperBLAST

Q7D3Z9: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

84% id,
99% cov

DAPA_MYCTU / P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Mycobacterium tuberculosis
P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Mycobacterium tuberculosis

37% id,
91% cov

O67216: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Aquifex aeolicus

33% id,
99% cov

More...

SMc02404: dihydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

80% id,
100% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

61% id,
100% cov

DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti
Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti

59% id,
100% cov

More...

SMa0707: dihydrodipicolinate synthase
is similar to:
PaperBLAST

Q7D313: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

64% id,
98% cov

dapA / Q04796: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacillus subtilis

28% id,
95% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

26% id,
99% cov

More...

SM_b21508: dihydrodipicolinate synthetase
is similar to:
PaperBLAST

Q7D0E8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

62% id,
99% cov

DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa
Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa

34% id,
95% cov

dapA / Q04796: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacillus subtilis

31% id,
99% cov

More...

SM_b20299: N-acetylneuraminate lyase
is similar to:
PaperBLAST

DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa
Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa

32% id,
97% cov

Q7D0E8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

29% id,
97% cov

DAPA_MYCTU / P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Mycobacterium tuberculosis
P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Mycobacterium tuberculosis

29% id,
96% cov

More...

SMc02837: dihydrodipicolinate reductase
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

32% id,
93% cov

SMa1440: 5-dehydro-4-deoxyglucarate dehydratase
is similar to:
PaperBLAST

DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti
Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti

31% id,
95% cov

DAPA_THEMA / Q9X1K9: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Thermotoga maritima

29% id,
98% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

28% id,
96% cov

More...

SMc03259: hypothetical protein
is similar to:
PaperBLAST

DAPA_ECOLI / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli
DapA / b2478: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli
dapA / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli
P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli

28% id,
99% cov

A9CFV4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

28% id,
96% cov

O67216: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Aquifex aeolicus

33% id,
82% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory