Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc00557: alanine racemase
is similar to:
PaperBLAST

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

24% id,
90% cov

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

25% id,
84% cov

SMc01801: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

40% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1227501-1229003 (frame -2) on NC_003047
is similar to:
PaperBLAST

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis
Also see hits to annotated proteins above

24% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory