Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 11 curated entries in PaperBLAST's database that match '5.1.3.29' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b21108: hypothetical protein
is similar to:
PaperBLAST

SM_b21108: L-fucose mutarotase (EC 5.1.3.29) from Sinorhizobium meliloti

100% id,
100% cov

SMc02173: hypothetical protein
is similar to:
PaperBLAST

FUCM_HUMAN / A2VDF0: Fucose mutarotase; EC 5.1.3.29 from Homo sapiens
A2VDF0: L-fucose mutarotase (EC 5.1.3.29) from Homo sapiens

41% id,
94% cov

FUCM_ECOLI / P0AEN8: L-fucose mutarotase; D-ribose pyranase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29; EC 5.4.99.62 from Escherichia coli
FucU / b2804: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
fucU / P0AEN8: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
P0AEN8: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Escherichia coli

38% id,
99% cov

FUCM_MOUSE / Q8R2K1: Fucose mutarotase; EC 5.1.3.29 from Mus musculus
Q8R2K1: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Mus musculus

39% id,
95% cov

SM_b21302: hypothetical protein
is similar to:
PaperBLAST

FUCM_HUMAN / A2VDF0: Fucose mutarotase; EC 5.1.3.29 from Homo sapiens
A2VDF0: L-fucose mutarotase (EC 5.1.3.29) from Homo sapiens

37% id,
94% cov

FUCM_ECOLI / P0AEN8: L-fucose mutarotase; D-ribose pyranase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29; EC 5.4.99.62 from Escherichia coli
FucU / b2804: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
fucU / P0AEN8: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
P0AEN8: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Escherichia coli

35% id,
100% cov

FUCM_MOUSE / Q8R2K1: Fucose mutarotase; EC 5.1.3.29 from Mus musculus
Q8R2K1: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Mus musculus

34% id,
95% cov

SMc03002: hypothetical protein
is similar to:
PaperBLAST

SM_b21108: L-fucose mutarotase (EC 5.1.3.29) from Sinorhizobium meliloti

33% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory