Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 15 curated entries in PaperBLAST's database that match '5.1.3.4' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc01621: L-fuculose phosphate aldolase
is similar to:
PaperBLAST

C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum

28% id,
83% cov

Shewana3_2065: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Shewanella sp.

24% id,
85% cov

CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp.

27% id,
76% cov

SMa1976: hypothetical protein
is similar to:
PaperBLAST

C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum

25% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory