Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 89 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc01023: triosephosphate isomerase
is similar to:
PaperBLAST

TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae
Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae

58% id,
100% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

44% id,
99% cov

TPIS_CANAL / Q9P940: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Candida albicans
TPI1: triosephosphate isomerase (TIM); EC 5.3.1.1 from Candida albicans

45% id,
97% cov

More...

SMc01614: triosephosphate isomerase
is similar to:
PaperBLAST

Q7X216: triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae

46% id,
96% cov

A0A1D3TX75: triose-phosphate isomerase (EC 5.3.1.1) from Anaerobium acetethylicum

43% id,
96% cov

TPIS_BACCE / Q4MQ55: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus

41% id,
98% cov

More...

SMc03981: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

49% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory