Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 18 curated entries in PaperBLAST's database that match '5.3.1.24' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02767: N-(5'-phosphoribosyl)anthranilate isomerase
is similar to:
PaperBLAST

trpF / GB|AAA21897.1: phosphoribosylanthranilate isomerase; EC 5.3.1.24 from Acinetobacter calcoaceticus

37% id,
100% cov

trpF / Q56320: phosphoribosylanthranilate isomerase subunit (EC 5.3.1.24) from Thermotoga maritima

36% id,
99% cov

trpF: phosphoribosylanthranilate isomerase; EC 5.3.1.24 from Burkholderia multivorans

37% id,
91% cov

More...

SMc02570: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

37% id,
97% cov

SMc02569: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

27% id,
97% cov

SMc00236: Indole-3-glycerol phosphate synthase
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
P00909: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Escherichia coli

40% id,
57% cov

P24920: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Phytophthora parasitica

41% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory