Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 34 curated entries in PaperBLAST's database that match '5.3.1.8' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc03111: mannose-6-phosphate isomerase
is similar to:
PaperBLAST

SMc03111: mannose 6-phosphate isomerase (EC 5.3.1.8) from Sinorhizobium meliloti

100% id,
100% cov

SM_b21082: mannose-6-phosphate isomerase, GDP-mannose pyrophosphorylase
is similar to:
PaperBLAST

SMc03111: mannose 6-phosphate isomerase (EC 5.3.1.8) from Sinorhizobium meliloti

33% id,
97% cov

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

40% id,
75% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

39% id,
75% cov

More...

SMc00637: phosphoglucosamine mutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

28% id,
99% cov

SM_b21081: phosphoglucomutase phosphomannomutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

25% id,
92% cov

SM_b20809: arabinose-5-phosphate isomerase
is similar to:
PaperBLAST

PGMI_PYRAE / Q8ZWV0: Bifunctional phosphoglucose/phosphomannose isomerase; Glucose-6-phosphate isomerase; GPI; Mannose-6-phosphate isomerase; Phosphoglucose isomerase; PGI; Phosphomannose isomerase; PMI; EC 5.3.1.9; EC 5.3.1.8 from Pyrobaculum aerophilum

26% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory