Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 11 curated entries in PaperBLAST's database that match '5.4.3.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc00355: hypothetical protein
is similar to:
PaperBLAST

ABLA_METMA / Q8PYC9: L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanosarcina mazei
Q8PYC9: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanosarcina mazei

37% id,
81% cov

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale

37% id,
80% cov

ABLA_METMP / Q6LYX4: L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanococcus maripaludis
Q6LYX4: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanococcus maripaludis

38% id,
75% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory