Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa1461: muconate cycloisomerase
is similar to:
PaperBLAST

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

28% id,
99% cov

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

29% id,
95% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

29% id,
94% cov

More...

SM_b21107: mandelate racemase or evolutionary related enzyme of the mandelate racemase muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

27% id,
95% cov

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

26% id,
99% cov

salC / Q4KPK2: muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei
Q4KPK2: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
98% cov

More...

SM_b20510: galactonate dehydratase
is similar to:
PaperBLAST

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

26% id,
94% cov

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

25% id,
88% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

24% id,
91% cov

SMa1351: enolase
is similar to:
PaperBLAST

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
95% cov

SMa0708: enolase
is similar to:
PaperBLAST

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

25% id,
90% cov

SMa0056: dehydratase/enolase
is similar to:
PaperBLAST

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

29% id,
76% cov

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

29% id,
77% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

29% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory