Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.27' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20510: galactonate dehydratase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

32% id,
98% cov

SMa1351: enolase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

32% id,
98% cov

SMa0708: enolase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

33% id,
91% cov

SMa1461: muconate cycloisomerase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

30% id,
98% cov

SMa0064: dehydratase/enolase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

26% id,
95% cov

SM_b21107: mandelate racemase or evolutionary related enzyme of the mandelate racemase muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

27% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory