Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 1 curated entries in PaperBLAST's database that match 'cytochrome%deoxyribose dehydrogenase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20402: alcohol dehydrogenase cytochrome c subunit precursor
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

36% id,
94% cov

SMc00086: diheme cytochrome C-type signal peptide protein
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

34% id,
68% cov

SMa0118: hypothetical protein
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

30% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory