Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa1447: Permease, MFS
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

25% id,
98% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

22% id,
94% cov

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

24% id,
87% cov

SMc03825: transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

28% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory