Curated BLAST for Genomes


Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0459: glutathione-dependent formaldehyde dehydrogenase
is similar to:

Q97YM2: D-threo-aldose 1-dehydrogenase (EC from Saccharolobus solfataricus

30% id,
98% cov

Synpcc7942_0026: hypothetical protein
is similar to:

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC from Pseudomonas sp.
Q52472: D-threo-aldose 1-dehydrogenase (EC from Pseudomonas sp.

38% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory