Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.138' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0684: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

MTDH_AGABI / O93868: NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; EC 1.1.1.138 from Agaricus bisporus

33% id,
98% cov

SDR_YARLI / Q6CEE9: Probable NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; Short chain dehydrogenase/reductase; YlSDR; EC 1.1.1.138 from Yarrowia lipolytica

35% id,
90% cov

Synpcc7942_1573: 3-oxoacyl-(acyl-carrier protein) reductase
is similar to:
PaperBLAST

MTDH_ALTAL / P0C0Y4: NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; Allergen Alt a 8; EC 1.1.1.138 from Alternaria alternata
P0C0Y4: mannitol 2-dehydrogenase (NADP+) (EC 1.1.1.138) from Alternaria alternata

30% id,
93% cov

SDR_YARLI / Q6CEE9: Probable NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; Short chain dehydrogenase/reductase; YlSDR; EC 1.1.1.138 from Yarrowia lipolytica

30% id,
88% cov

Synpcc7942_0459: glutathione-dependent formaldehyde dehydrogenase
is similar to:
PaperBLAST

A5VMM4: mannitol 2-dehydrogenase (NADP+) (EC 1.1.1.138) from Limosilactobacillus reuteri

27% id,
88% cov

Synpcc7942_1596: short chain dehydrogenase
is similar to:
PaperBLAST

SDR_YARLI / Q6CEE9: Probable NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; Short chain dehydrogenase/reductase; YlSDR; EC 1.1.1.138 from Yarrowia lipolytica

28% id,
67% cov

Synpcc7942_2503: protochlorophyllide oxidoreductase
is similar to:
PaperBLAST

MTDH_AGABI / O93868: NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; EC 1.1.1.138 from Agaricus bisporus

24% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

677986-678768 (frame +1) on NC_007604
is similar to:
PaperBLAST

SDR_YARLI / Q6CEE9: Probable NADP-dependent mannitol dehydrogenase; MtDH; Mannitol 2-dehydrogenase [NADP(+)]; Short chain dehydrogenase/reductase; YlSDR; EC 1.1.1.138 from Yarrowia lipolytica
Also see hits to annotated proteins above

35% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory