Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_1719: isocitrate dehydrogenase is similar to:	PaperBLAST
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa	80% id, 99% cov
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda	46% id, 100% cov
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa	45% id, 99% cov
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli	44% id, 93% cov
Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea	43% id, 93% cov
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii	45% id, 89% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	40% id, 89% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	46% id, 74% cov
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB\|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis	55% id, 62% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	54% id, 62% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	53% id, 62% cov
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori	50% id, 66% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	49% id, 66% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	49% id, 59% cov
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB\|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis	59% id, 38% cov
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli	61% id, 36% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	41% id, 51% cov
Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea	58% id, 36% cov
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii	60% id, 35% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	40% id, 52% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	48% id, 42% cov
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori	58% id, 35% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	39% id, 52% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	51% id, 39% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	45% id, 41% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	27% id, 60% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	44% id, 27% cov
More...

Synpcc7942_1505: 3-isopropylmalate dehydrogenase is similar to:	PaperBLAST
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	28% id, 96% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	28% id, 86% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	35% id, 65% cov
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda	26% id, 80% cov
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa	39% id, 34% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	32% id, 39% cov
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli	36% id, 34% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	39% id, 31% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	37% id, 32% cov
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii	36% id, 33% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	38% id, 26% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory