Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 17 curated entries in PaperBLAST's database that match '1.1.1.6' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_1653: glycerol dehydrogenase
is similar to:
PaperBLAST

GLDA_ECOLI / P0A9S5: Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Escherichia coli
GldA / b3945: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli
gldA / RF|NP_418380: glycerol dehydrogenase; EC 1.1.1.6 from Escherichia coli
gldA / P0A9S5: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli

43% id,
97% cov

B2ZPN8: glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae

43% id,
97% cov

Q8ZKM9: glycerol dehydrogenase (EC 1.1.1.6) from Salmonella enterica

42% id,
97% cov

More...

Synpcc7942_2285: glycerol dehydrogenase
is similar to:
PaperBLAST

GLDA_ECOLI / P0A9S5: Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Escherichia coli
GldA / b3945: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli
gldA / RF|NP_418380: glycerol dehydrogenase; EC 1.1.1.6 from Escherichia coli
gldA / P0A9S5: L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli

35% id,
93% cov

Q8ZKM9: glycerol dehydrogenase (EC 1.1.1.6) from Salmonella enterica

34% id,
95% cov

B2ZPN8: glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae

34% id,
93% cov

More...

Synpcc7942_0684: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
95% cov

Synpcc7942_1596: short chain dehydrogenase
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory