Curated BLAST
Searching in Synechococcus elongatus PCC 7942 (SynE)
Found 13 curated entries in PaperBLAST's database that match '1.1.2.4'.
These curated entries have 9 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Synechococcus elongatus PCC 7942, or try another query
Synpcc7942_0276: glycolate oxidase subunit GlcD is similar to: | PaperBLAST |
LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus | 31% id, 93% cov |
LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio | 30% id, 93% cov |
W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta | 30% id, 84% cov |
YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe | 27% id, 88% cov |
DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae | 25% id, 93% cov |
DLD1_YEAST / P32891: D-lactate dehydrogenase [cytochrome] 1, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.2.4 from Saccharomyces cerevisiae DLD1 / P32891: D-lactate dehydrogenase (EC 1.1.2.4) from Saccharomyces cerevisiae | 29% id, 80% cov |
DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae | 26% id, 87% cov |
DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana | 29% id, 75% cov |
LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens | 33% id, 53% cov |
More... |
Synpcc7942_1718: glycolate oxidase subunit GlcE is similar to: | PaperBLAST |
LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus | 27% id, 86% cov |
DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana | 27% id, 48% cov |
DLD1_YEAST / P32891: D-lactate dehydrogenase [cytochrome] 1, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.2.4 from Saccharomyces cerevisiae DLD1 / P32891: D-lactate dehydrogenase (EC 1.1.2.4) from Saccharomyces cerevisiae | 24% id, 44% cov |
DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae | 21% id, 49% cov |
LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens | 33% id, 27% cov |
W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta | 24% id, 30% cov |
More... |
Synpcc7942_0567: hypothetical protein is similar to: | PaperBLAST |
LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio | 23% id, 85% cov |
LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus | 24% id, 59% cov |
DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana | 24% id, 35% cov |
LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens | 29% id, 25% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
270007-271659 (frame -2) on NC_007604 is similar to: | PaperBLAST |
LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus Also see hits to annotated proteins above | 31% id, 96% cov |
W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta Also see hits to annotated proteins above | 29% id, 95% cov |
DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana Also see hits to annotated proteins above | 27% id, 96% cov |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory