Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 14 curated entries in PaperBLAST's database that match '1.1.2.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0276: glycolate oxidase subunit GlcD
is similar to:
PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

31% id,
93% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

30% id,
93% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

30% id,
84% cov

More...

Synpcc7942_1718: glycolate oxidase subunit GlcE
is similar to:
PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

27% id,
86% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
AT5G06580 / Q94AX4: glycolate dehydrogenase / D-lactate dehydrogenase (EC 1.1.99.14; EC 1.1.2.4) from Arabidopsis thaliana
Q94AX4: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Arabidopsis thaliana

27% id,
48% cov

DLD1_YEAST / P32891: D-lactate dehydrogenase [cytochrome] 1, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.2.4 from Saccharomyces cerevisiae
DLD1 / P32891: D-lactate dehydrogenase (EC 1.1.2.4) from Saccharomyces cerevisiae

24% id,
44% cov

More...

Synpcc7942_0567: hypothetical protein
is similar to:
PaperBLAST

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

23% id,
85% cov

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

24% id,
59% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
AT5G06580 / Q94AX4: glycolate dehydrogenase / D-lactate dehydrogenase (EC 1.1.99.14; EC 1.1.2.4) from Arabidopsis thaliana
Q94AX4: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Arabidopsis thaliana

24% id,
35% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

270007-271659 (frame -2) on NC_007604
is similar to:
PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus
Also see hits to annotated proteins above

31% id,
96% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta
Also see hits to annotated proteins above

29% id,
95% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
AT5G06580 / Q94AX4: glycolate dehydrogenase / D-lactate dehydrogenase (EC 1.1.99.14; EC 1.1.2.4) from Arabidopsis thaliana
Q94AX4: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Arabidopsis thaliana
Also see hits to annotated proteins above

27% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory