Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 17 curated entries in PaperBLAST's database that match '1.1.99.6' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0276: glycolate oxidase subunit GlcD
is similar to:
PaperBLAST

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

53% id,
91% cov

PGA1_c29720: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Phaeobacter inhibens

47% id,
96% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

44% id,
98% cov

More...

Synpcc7942_1717: glycolate oxidase subunit (Fe-S) protein
is similar to:
PaperBLAST

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

42% id,
92% cov

PGA1_c29700: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Phaeobacter inhibens

39% id,
89% cov

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Cupriavidus basilensis

34% id,
98% cov

More...

Synpcc7942_1718: glycolate oxidase subunit GlcE
is similar to:
PaperBLAST

SMc00833: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Sinorhizobium meliloti

29% id,
98% cov

PGA1_c29710: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Phaeobacter inhibens

26% id,
98% cov

RR42_RS17310: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Cupriavidus basilensis

26% id,
91% cov

More...

Synpcc7942_0567: hypothetical protein
is similar to:
PaperBLAST

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

24% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory