Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0608: hypothetical protein
is similar to:		 PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

 55% id,
99% cov

MTND_BACSU / O31669: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Bacillus subtilis

 33% id,
92% cov

Q0WSS4: acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Arabidopsis thaliana

 28% id,
79% cov

More...

Synpcc7942_0196: Beta-carotene 15,15'-dioxygenase
is similar to:		 PaperBLAST

Q8YXV3: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Nostoc sp.

 31% id,
97% cov

NCED4_ORYSJ / Q69NX5: 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic; OsNCED4; EC 1.13.11.51 from Oryza sativa

 31% id,
79% cov

NCED2_ORYSJ / Q5MBR6: 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic; OsNCED2; EC 1.13.11.51 from Oryza sativa

 28% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory