Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 89 curated entries in PaperBLAST's database that match '1.13.11.6'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0196: Beta-carotene 15,15'-dioxygenase
is similar to:
PaperBLAST

NINAB_GALME / A8Y9I2: Carotenoid isomerooxygenase; Beta-carotene 15,15'-monooxygenase and retinoid isomerase; Beta-carotene dioxygenase and retinoid isomerase; Neither inactivation nor afterpotential mutant B; EC 1.13.11.65 from Galleria mellonella
A8Y9I2: carotenoid isomerooxygenase (EC 1.13.11.65) from Galleria mellonella

29% id,
96% cov

Q1GSG1: carotenoid isomerooxygenase (EC 1.13.11.65) from Sphingopyxis alaskensis

30% id,
91% cov

E3T3A2: carlactone synthase (EC 1.13.11.69); all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase (EC 1.13.11.70) from Actinidia chinensis

30% id,
87% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

196100-197596 (frame -1) on NC_007604
is similar to:
PaperBLAST

P9WPR5: carotenoid isomerooxygenase (EC 1.13.11.65); all-trans-8'-apo-beta-carotenal 15,15'-oxygenase (EC 1.13.11.75) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

29% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory