Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 8 curated entries in PaperBLAST's database that match '1.13.12.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0369: putative flavin-containing monoamine oxidase
is similar to:
PaperBLAST

davB / B3IVI6: L-lysine monooxygenase monomer (EC 1.13.12.2) from Pseudomonas putida

25% id,
87% cov

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

25% id,
87% cov

Pf1N1B4_2505: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

33% id,
24% cov

More...

Synpcc7942_1512: zeta-carotene desaturase
is similar to:
PaperBLAST

W6JQJ6: lysine 2-monooxygenase (EC 1.13.12.2); L-amino-acid oxidase (EC 1.4.3.2) from Pseudomonas sp.

30% id,
23% cov

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

30% id,
23% cov

AO356_14230: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

30% id,
23% cov

More...

Synpcc7942_0841: putative flavoprotein involved in K+ transport
is similar to:
PaperBLAST

davB / B3IVI6: L-lysine monooxygenase monomer (EC 1.13.12.2) from Pseudomonas putida

42% id,
9% cov

AO356_14230: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

42% id,
9% cov

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

42% id,
9% cov

More...

Synpcc7942_0623: thioredoxin reductase
is similar to:
PaperBLAST

davB / B3IVI6: L-lysine monooxygenase monomer (EC 1.13.12.2) from Pseudomonas putida

40% id,
8% cov

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

40% id,
8% cov

W6JQJ6: lysine 2-monooxygenase (EC 1.13.12.2); L-amino-acid oxidase (EC 1.4.3.2) from Pseudomonas sp.

38% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory