Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0369: putative flavin-containing monoamine oxidase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
97% cov

Synpcc7942_0946: UDP-galactopyranose mutase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

25% id,
95% cov

Synpcc7942_1983: zeta-carotene desaturase / three-step phytoene desaturase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

23% id,
95% cov

Synpcc7942_0132: hypothetical protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

33% id,
36% cov

Synpcc7942_1512: zeta-carotene desaturase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
40% cov

Synpcc7942_0431: hypothetical protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

44% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory