Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 3 curated entries in PaperBLAST's database that match '2.1.3.9'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_2514: ornithine carbamoyltransferase
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

33% id,
98% cov

Synpcc7942_0670: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

25% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory