Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 120 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 82 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0923: 5'-methylthioadenosine phosphorylase
is similar to:
PaperBLAST

C6KFA4: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from uncultured bacterium

59% id,
95% cov

MTAP_RHORT / Q2RXH9: S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; EC 2.4.2.28 from Rhodospirillum rubrum

50% id,
98% cov

MTAP_SCHPO / Q09816: S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPase; EC 2.4.2.28 from Schizosaccharomyces pombe

46% id,
95% cov

More...

Synpcc7942_0455: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile

54% id,
97% cov

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 preQ1 transglycosylase (EC 2.4.2.29) from Escherichia coli

47% id,
99% cov

Q54177: tRNA-guanosine34 preQ1 transglycosylase (EC 2.4.2.29) from Shigella flexneri

47% id,
99% cov

More...

Synpcc7942_0346: Protein of unknown function DUF152
is similar to:
PaperBLAST

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

35% id,
66% cov

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC 2.4.2.1; EC 2.4.2.28; EC 3.5.4.4; EC 1.10.3.2) from Escherichia coli

34% id,
68% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

28% id,
67% cov

Synpcc7942_1398: Cellulose synthase (UDP-forming)
is similar to:
PaperBLAST

Q9SRW9: 1,4-beta-D-xylan synthase (EC 2.4.2.24) from Arabidopsis thaliana

27% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory