Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 8 curated entries in PaperBLAST's database that match '2.5.1.73' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_B2661: cysteine desulfurase
is similar to:
PaperBLAST

Q8PVS9: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanosarcina mazei

26% id,
63% cov

Synpcc7942_1255: L-cysteine/cystine lyase
is similar to:
PaperBLAST

Q12W26: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcoides burtonii

34% id,
35% cov

Q8PVS9: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanosarcina mazei

28% id,
35% cov

Synpcc7942_1738: cysteine desulfurase
is similar to:
PaperBLAST

Q8PVS9: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanosarcina mazei

23% id,
51% cov

SPSS1_ARCFU / O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC 2.5.1.73 from Archaeoglobus fulgidus
O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Archaeoglobus fulgidus

19% id,
52% cov

Synpcc7942_2558: cysteine desulfurase NifS
is similar to:
PaperBLAST

SPSS1_ARCFU / O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC 2.5.1.73 from Archaeoglobus fulgidus
O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Archaeoglobus fulgidus

24% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory