Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.17' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0943: acetylornithine aminotransferase
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

45% id,
98% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

38% id,
97% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

37% id,
96% cov

Synpcc7942_1794: succinyldiaminopimelate transaminase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

33% id,
98% cov

Q82IK5: succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Streptomyces avermitilis

29% id,
96% cov

Synpcc7942_2545: aspartate aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

33% id,
98% cov

Q82IK5: succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Streptomyces avermitilis

26% id,
95% cov

Synpcc7942_0031: aminotransferase
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

32% id,
95% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

33% id,
72% cov

Synpcc7942_0645: glutamate-1-semialdehyde aminotransferase
is similar to:
PaperBLAST

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

37% id,
70% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

35% id,
75% cov

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

32% id,
81% cov

Synpcc7942_0853: L,L-diaminopimelate aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

24% id,
86% cov

Synpcc7942_2258: valine--pyruvate transaminase
is similar to:
PaperBLAST

Q82IK5: succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Streptomyces avermitilis

29% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory