Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 16 curated entries in PaperBLAST's database that match '2.6.1.39'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_2545: aspartate aminotransferase
is similar to:
PaperBLAST

AAT_RHIME / P58350: Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti
SMc04386: 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) from Sinorhizobium meliloti

44% id,
95% cov

Synpcc7942_0943: acetylornithine aminotransferase
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

36% id,
96% cov

Synpcc7942_0031: aminotransferase
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

32% id,
96% cov

Synpcc7942_1725: transcriptional regulator, GntR family
is similar to:
PaperBLAST

LYSN_THET2 / Q72LL6: 2-aminoadipate transaminase; 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT; EC 2.6.1.39 from Thermus thermophilus
Q72LL6: 2-aminoadipate transaminase (EC 2.6.1.39) from Thermus thermophilus

29% id,
91% cov

lysN / Q5SL82: L-2-aminoadipate aminotransferase monomer (EC 2.6.1.39) from Thermus thermophilus

29% id,
91% cov

AADAT_MOUSE / Q9WVM8: Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial; KAT/AadAT; 2-aminoadipate aminotransferase; 2-aminoadipate transaminase; Alpha-aminoadipate aminotransferase; AadAT; Glycine transaminase AADAT; Kynurenine aminotransferase II; Kynurenine--glyoxylate transaminase AADAT; Kynurenine--oxoglutarate aminotransferase II; Kynurenine--oxoglutarate transaminase 2; Kynurenine--oxoglutarate transaminase II; Methionine--glyoxylate transaminase AADAT; EC 2.6.1.39; EC 2.6.1.4; EC 2.6.1.63; EC 2.6.1.7; EC 2.6.1.73 from Mus musculus
Q9WVM8: 2-aminoadipate transaminase (EC 2.6.1.39); kynurenine-oxoglutarate transaminase (EC 2.6.1.7) from Mus musculus

26% id,
84% cov

More...

Synpcc7942_0645: glutamate-1-semialdehyde aminotransferase
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

33% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2624934-2626154 (frame +3) on NC_007604
is similar to:
PaperBLAST

AAT_RHIME / P58350: Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti
SMc04386: 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) from Sinorhizobium meliloti
Also see hits to annotated proteins above

44% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory