Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 16 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0894: shikimate kinase
is similar to:
PaperBLAST

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

36% id,
41% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

34% id,
37% cov

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

48% id,
18% cov

Synpcc7942_0600: serine/threonine protein kinase
is similar to:
PaperBLAST

Q61036: gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mus musculus

30% id,
46% cov

Q29502: gluconokinase (EC 2.7.1.12) from Oryctolagus cuniculus

29% id,
48% cov

Synpcc7942_0780: serine/threonine protein kinase
is similar to:
PaperBLAST

Q61036: gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mus musculus

28% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

588534-590132 (frame -3) on NC_007604
is similar to:
PaperBLAST

Q61036: gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mus musculus
Also see hits to annotated proteins above

29% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory