Curated BLAST for Genomes


Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0588: phosphoribosylglycinamide formyltransferase 2
is similar to:

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli

56% id,
96% cov

Synpcc7942_2079: acetate kinase
is similar to:

TDCD_ECOLI / P11868: Propionate kinase; EC from Escherichia coli
YhaA / b3115: propionate kinase (EC; EC; EC; EC from Escherichia coli

40% id,
98% cov

TDCD_SALTY / O06961: Propionate kinase; EC from Salmonella typhimurium
O06961: propionate kinase (EC from Salmonella enterica

40% id,
98% cov

PDUW_CITFR / B1VB81: Propionate kinase; EC from Citrobacter freundii

40% id,
97% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory