Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 46 curated entries in PaperBLAST's database that match '3.5.1.1' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0166: hypothetical protein
is similar to:
PaperBLAST

W0KM71: asparaginase (EC 3.5.1.1) from Nocardiopsis alba

35% id,
93% cov

Q9RFN5: asparaginase (EC 3.5.1.1) from Rhizobium etli

34% id,
85% cov

PGA1_c36210: L-asparaginase (EC 3.5.1.1) from Phaeobacter inhibens

31% id,
89% cov

Synpcc7942_0103: Ankyrin
is similar to:
PaperBLAST

LPP60_RAT / O88202: 60 kDa lysophospholipase; Lysophospholipase-transacylase; EC 3.1.1.5; EC 3.5.1.1; EC 3.1.1.47 from Rattus norvegicus

36% id,
13% cov

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus

33% id,
12% cov

ASPG_DIRIM / Q9U518: L-asparaginase; DiAsp; L-asparagine amidohydrolase; EC 3.5.1.1 from Dirofilaria immitis

38% id,
10% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

103274-103666 (frame -1) on NC_007604
is similar to:
PaperBLAST

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus
Also see hits to annotated proteins above

31% id,
16% cov

W0G253: asparaginase (EC 3.5.1.1) from Rhizomucor miehei
Also see hits to annotated proteins above

29% id,
15% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory