Curated BLAST for Genomes


Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 33 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_1103: glucosamine-6-phosphate isomerase 2
is similar to:

GPI1 / O97439: glucosamine 6-phosphate isomerase 1 (EC from Giardia intestinalis

43% id,
88% cov

GAMA_BACSU / O31458: Probable glucosamine-6-phosphate deaminase 2; GlcN6P deaminase 2; GNPDA 2; Glucosamine-6-phosphate isomerase 2; EC from Bacillus subtilis

38% id,
98% cov

NAGB_BACSU / O35000: Glucosamine-6-phosphate deaminase 1; GlcN6P deaminase 1; GNPDA 1; Glucosamine-6-phosphate isomerase 1; EC from Bacillus subtilis

36% id,
98% cov


Synpcc7942_0534: D-fructose-6-phosphate amidotransferase
is similar to:

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC from Pseudomonas fluorescens

32% id,
93% cov

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC from Caulobacter crescentus

30% id,
92% cov

Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC from Shewanella amazonensis

27% id,
98% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory