Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 55 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_1037: arginine decarboxylase
is similar to:
PaperBLAST

P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

63% id,
97% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

64% id,
95% cov

A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Bacteroides dorei

44% id,
100% cov

More...

Synpcc7942_0707: arginine decarboxylase
is similar to:
PaperBLAST

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

30% id,
98% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

28% id,
52% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

29% id,
43% cov

More...

Synpcc7942_2249: S-adenosylmethionine decarboxylase proenzyme
is similar to:
PaperBLAST

ARGDC_SACS2 / Q9UWU1: Arginine decarboxylase proenzyme; ADC; ArgDC; Pyruvoyl-dependent arginine decarboxylase; EC 4.1.1.19 from Saccharolobus solfataricus
Q9UWU1: arginine decarboxylase (EC 4.1.1.19) from Saccharolobus solfataricus

33% id,
89% cov

Synpcc7942_2043: S-adenosylmethionine decarboxylase proenzyme
is similar to:
PaperBLAST

ARGDC_SACS2 / Q9UWU1: Arginine decarboxylase proenzyme; ADC; ArgDC; Pyruvoyl-dependent arginine decarboxylase; EC 4.1.1.19 from Saccharolobus solfataricus
Q9UWU1: arginine decarboxylase (EC 4.1.1.19) from Saccharolobus solfataricus

33% id,
79% cov

Synpcc7942_0262: diaminopimelate decarboxylase
is similar to:
PaperBLAST

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

25% id,
56% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

28% id,
47% cov

SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana
Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana

24% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory