Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 26 curated entries in PaperBLAST's database that match '4.1.2.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0983: deoxyribose-phosphate aldolase
is similar to:
PaperBLAST

C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.

38% id,
100% cov

deoC / C0LSK9: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp.
C0LSK9: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp.

38% id,
99% cov

DEOC_ACIB4 / B5IEU6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aciduliprofundum boonei

39% id,
96% cov

More...

Synpcc7942_1622: probable proteinase
is similar to:
PaperBLAST

DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis
Q877I0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis

22% id,
49% cov

Synpcc7942_1933: isopentenyl pyrophosphate isomerase
is similar to:
PaperBLAST

DEOC_AERPE / Q9Y948: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aeropyrum pernix

56% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory