Curated BLAST for Genomes


Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0017: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
is similar to:

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC; EC from Thermotoga maritima

32% id,
87% cov

YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC; EC from Escherichia coli
dgoA / Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC from Escherichia coli

32% id,
84% cov

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC from Dickeya dadantii

30% id,
86% cov


Synpcc7942_1847: dihydrodipicolinate synthase
is similar to:

KDGA_SULAC / Q4JC35: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC from Sulfolobus acidocaldarius
Q4JC35: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC from Sulfolobus acidocaldarius

26% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory